Package: GALLO
Title: Genomic Annotation in Livestock for Positional Candidate LOci
Version: 1.1
Authors@R: 
    c(person(given = "Pablo",
           family = "Fonseca",
           role = c("aut", "cre"),
           email = "pfonseca@uoguelph.ca"), person("Aroa", "Suarez-Vega", email = "asuarezv@uoguelph.ca", role = "aut"),person("Gabriele", "Marras", email = "gmarras@semex.com", role = "aut"),person("Angela", "Cánovas", email = "acanovas@uoguelph.ca", role = "aut"))
Description: The accurate annotation of genes and Quantitative Trait
        Loci (QTLs) located within candidate markers and/or regions
        (haplotypes, windows, CNVs, etc) is a crucial step the most
        common genomic analyses performed in livestock, such as
        Genome-Wide Association Studies or transcriptomics. The Genomic
        Annotation in Livestock for positional candidate LOci (GALLO)
        is an R package designed to provide an intuitive and
        straightforward environment to annotate positional candidate
        genes and QTLs from high-throughput genetic studies in
        livestock. Moreover, GALLO allows the graphical visualization
        of gene and QTL annotation results, data comparison among
        different grouping factors (e.g., methods, breeds, tissues,
        statistical models, studies, etc.), and QTL enrichment in
        different livestock species including cattle, pigs, sheep, and
        chicken, among others.
URL: <https://github.com/pablobio/GALLO>
Depends: R (>= 4.0.0)
biocViews: Software
Imports: circlize, DT, data.table, doParallel, dplyr, dynamicTreeCut,
        ggplot2, graphics, grDevices, foreach, lattice , magick,
        parallel, RColorBrewer, rtracklayer, stats, stringr, unbalhaar,
        utils
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: BiocStyle, Hmisc, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libbz2-dev
        libicu-dev liblzma-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://pablobio.r-universe.dev
Date/Publication: 2021-02-26 18:59:33 UTC
RemoteUrl: https://github.com/pablobio/gallo
RemoteRef: HEAD
RemoteSha: 96f8b8f97f9e0a8d73cc8a6dd51d65735dee09ba
NeedsCompilation: no
Packaged: 2026-07-15 04:39:51 UTC; root
Author: Pablo Fonseca [aut, cre],
  Aroa Suarez-Vega [aut],
  Gabriele Marras [aut],
  Angela Cánovas [aut]
Maintainer: Pablo Fonseca <pfonseca@uoguelph.ca>